Would a denatured antigen be expected to have the same epitopes as its native (non-denatured) counterpart? Why?
A) Yes-epitopes are just a sequence of amino acids in a row,so they do not change regardless of 3D shape of the protein molecule they lie within.
B) No-ALL epitopes are dependent on being in the proper original 3D conformation in the protein they arise within.Denaturing them would destroy them by destroying that conformation.
C) Yes AND No-SOME epitopes are dependent on 3D conformation (conformational epitopes) ,while some simply depend on the sequence of amino acids (linear epitopes) .So,really,it depends on the particular epitope.
D) Yes-all proteins must be broken down into individual epitopes for presentation to B and T cells on MHC molecules,so each antigen protein MUST be denatured to yield ANY epitopes.
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